MultiModulon

User Guide

  • Installation
  • Data Preparation

Core Functionality

  • Initialization of MultiModulon Object
  • Gene Alignment
  • Optimization of Dimensions
  • Robust Multi-view ICA
  • Optimization of Thresholds
  • Visualization of iModulons

Examples & Tutorials

  • Basic Workflow
  • Characterization and Visualization

Additional Information

  • Changelog
  • Error Reporting
MultiModulon
  • Index

Index

A | G | M | O | R | S | V

A

  • align_genes() (MultiModulon method)

G

  • generate_A() (MultiModulon method)
  • generate_BBH() (MultiModulon method)
  • generate_X() (MultiModulon method)

M

  • MultiModulon (built-in class)

O

  • optimize_M_thresholds() (MultiModulon method)
  • optimize_number_of_core_components() (MultiModulon method)
  • optimize_number_of_unique_components() (MultiModulon method)

R

  • run_multiview_ica() (MultiModulon method)
  • run_robust_multiview_ica() (MultiModulon method)

S

  • SpeciesData (built-in class)

V

  • view_core_iModulon_weights() (MultiModulon method)
  • view_iModulon_activities() (MultiModulon method)
  • view_iModulon_weights() (MultiModulon method)

© Copyright 2025, Gaoyuan Li.

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